YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG4288-PA, CG4288-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	38	0.98
Transmembrane Helix	39	57	0.94
Non-Cytoplasmic	58	92	0.91
Transmembrane Helix	93	113	0.90
Cytoplasmic	114	120	0.76
Transmembrane Helix	121	141	0.94
Non-Cytoplasmic	142	148	0.81
Transmembrane Helix	149	171	0.89
Cytoplasmic	172	182	0.90
Transmembrane Helix	183	205	0.90
Non-Cytoplasmic	206	212	0.81
Transmembrane Helix	213	232	0.95
Cytoplasmic	233	267	0.93
Transmembrane Helix	268	284	0.90
Non-Cytoplasmic	285	312	0.84
Transmembrane Helix	313	335	0.87
Cytoplasmic	336	349	0.88
Transmembrane Helix	350	370	0.91
Non-Cytoplasmic	371	375	0.83
Transmembrane Helix	376	398	0.88
Cytoplasmic	399	406	0.82
Transmembrane Helix	407	431	0.84
Non-Cytoplasmic	432	440	0.84
Transmembrane Helix	441	461	0.96
Cytoplasmic	462	502	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDLESPKNG KHLEQVHQNN NEITESEPLT WRFWRKQRYI VVLLAFFGFF NVYSLRVNLS  60
   61 VAIVAMTENR TVFDADGNVS YQQDFPWDSK QKGLILSSFF YGYILTQFLG GYIGTKIGGN 120
  121 IVFGTGIGST AILTLLTPMA ASHSLEMFLF VRIIEGFFEG VTFPGIHAVW ARWSPPLERS 180
  181 RMASIAFAGN YAGTVVAMPC SGFLATKYGW ESVFYVFGTI GVIWYITWLV FVKAGPELDR 240
  241 FCSKEECDYI QKTIGYVGSK HVKHPWRAIF TSMPFYAIMA SHFSENWGFY TLLTQLPSFL 300
  301 RDTLNFDLGK TGILSAVPYL AMGILLAVSG YLADWLQVKG IWTTTQVRRN FNCGAFLAQT 360
  361 VFMMLTAYLL DPTWSVVSLT IAVGLGAFAW SGFAVNHLDI APQHASVLMG IGNTFATIPG 420
  421 IVSPLLTGYV VTNQTSDEWR IIFFISAGIY LVGCVIYWFY CSGDLQEWAK TPEQKAQEAE 480
  481 EKAQLQLTQT AGFVNSGAEL KD