YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Or92a-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFRKRKPKS DDEVITFDEL TRFPMTFYKT IGEDLYSDRD PNVIRRYLLR FYLVLGFLNF  60
   61 NAYVVGEIAY FIVHIMSTTT LLEATAVAPC IGFSFMADFK QFGLTVNRKR LVRLLDDLKE 120
  121 IFPLDLEAQR KYNVSFYRKH MNRVMTLFTI LCMTYTSSFS FYPAIKSTIK YYLMGSEIFE 180
  181 RNYGFHILFP YDAETDLTVY WFSYWGLAHC AYVAGVSYVC VDLLLIATIT QLTMHFNFIA 240
  241 NDLEAYEGGD HTDEENIKYL HNLVVYHARA LDLSEEVNNI FSFLILWNFI AASLVICFAG 300
  301 FQITASNVED IVLYFIFFSA SLVQVFVVCY YGDEMISSSS RIGHSAFNQN WLPCSTKYKR 360
  361 ILQFIIARSQ KPASIRPPTF PPISFNTFMK VISMSYQFFA LLRTTYYG

Type	Start	End	Confidence
Cytoplasmic	1	50	0.96
Transmembrane Helix	51	73	0.87
Non-Cytoplasmic	74	80	0.69
Transmembrane Helix	81	102	0.86
Cytoplasmic	103	143	0.96
Transmembrane Helix	144	165	0.92
Non-Cytoplasmic	166	204	0.97
Transmembrane Helix	205	229	0.85
Cytoplasmic	230	282	0.95
Transmembrane Helix	283	304	0.93
Non-Cytoplasmic	305	310	0.89
Transmembrane Helix	311	332	0.94
Cytoplasmic	333	408	0.87