YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24648377, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.65
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQPATPSTP VNNAPSATPS AASGPAASAP AVASSTPIRI NSAKQQGAAG GGDTLAHPAT  60
   61 PHSHSMPGTP HQQPQSSSVP TGGHLLQLQA PLPSAGGGTG AGAVTPSGLS MGASNQSLGV 120
  121 SVGAASSVSG ISITPPNSAG LRQSTGEWNP LLPAPLSVVV FFSPRFFSSL LLSFNVTHTH 180
  181 FSN

Type	Start	End	Confidence
Cytoplasmic	1	116	0.49
Transmembrane Helix	117	134	0.42
Non-Cytoplasmic	135	183	0.50