YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Rh3-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESGNVSSSL FGNVSTALRP EARLSAETRL LGWNVPPEEL RHIPEHWLTY PEPPESMNYL  60
   61 LGTLYIFFTL MSMLGNGLVI WVFSAAKSLR TPSNILVINL AFCDFMMMVK TPIFIYNSFH 120
  121 QGYALGHLGC QIFGIIGSYT GIAAGATNAF IAYDRFNVIT RPMEGKMTHG KAIAMIIFIY 180
  181 MYATPWVVAC YTETWGRFVP EGYLTSCTFD YLTDNFDTRL FVACIFFFSF VCPTTMITYY 240
  241 YSQIVGHVFS HEKALRDQAK KMNVESLRSN VDKNKETAEI RIAKAAITIC FLFFCSWTPY 300
  301 GVMSLIGAFG DKTLLTPGAT MIPACACKMV ACIDPFVYAI SHPRYRMELQ KRCPWLALNE 360
  361 KAPESSAVAS TSTTQEPQQT TAA

Type	Start	End	Confidence
Non-Cytoplasmic	1	62	0.95
Transmembrane Helix	63	83	0.95
Cytoplasmic	84	94	0.80
Transmembrane Helix	95	114	0.93
Non-Cytoplasmic	115	129	0.79
Transmembrane Helix	130	152	0.89
Cytoplasmic	153	171	0.85
Transmembrane Helix	172	190	0.93
Non-Cytoplasmic	191	218	0.92
Transmembrane Helix	219	241	0.92
Cytoplasmic	242	284	0.95
Transmembrane Helix	285	308	0.84
Non-Cytoplasmic	309	318	0.79
Transmembrane Helix	319	340	0.86
Cytoplasmic	341	383	0.92