YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Indy-2-PB, Indy-2-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.85
Transmembrane Helix	19	38	0.89
Non-Cytoplasmic	39	43	0.68
Transmembrane Helix	44	62	0.82
Cytoplasmic	63	67	0.66
Transmembrane Helix	68	89	0.83
Non-Cytoplasmic	90	96	0.71
Transmembrane Helix	97	116	0.92
Cytoplasmic	117	134	0.87
Transmembrane Helix	135	153	0.92
Non-Cytoplasmic	154	203	0.91
Transmembrane Helix	204	227	0.89
Cytoplasmic	228	246	0.88
Transmembrane Helix	247	269	0.93
Non-Cytoplasmic	270	313	0.91
Transmembrane Helix	314	334	0.84
Cytoplasmic	335	345	0.79
Transmembrane Helix	346	363	0.94
Non-Cytoplasmic	364	396	0.88
Transmembrane Helix	397	415	0.94
Cytoplasmic	416	429	0.77
Transmembrane Helix	430	453	0.80
Non-Cytoplasmic	454	475	0.73
Transmembrane Helix	476	497	0.88
Cytoplasmic	498	514	0.77
Transmembrane Helix	515	535	0.90
Non-Cytoplasmic	536	562	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEPGEQRKF VLGRCCIFHW RGKASIIIPL ITLPILIYGF QTDMAEFKCL WLIVTMALLW  60
   61 ITETLPIYVT ALFPLVFCPL LGLVNASIVC KQYFTDTIVV FLGGLIVALG IEYSNLHTRI 120
  121 ALRVIRIVGG SPRRLFVGLM SVSTFMGLWI SNSAGTAMMC PIVKALVNEL DTNKIFPVYM 180
  181 TQEEEPVEEG EPPHPSKITV AFYAGIAYAS SIGGLGTLIG TGTNLVFRGI YTERFPTSTV 240
  241 EITFANFMFY SIPLMVIVNV TLVIIAFLIT HMGLFRPNSK TGKIIAEANT NRKLMEDVLR 300
  301 QRHIDLGPMS CHEIQMAIAF AFMIVLLITR KPGFVPGWSD LINRKVVGSA SGLSFIVLLI 360
  361 FALPTQYTFF KYCCGKGPFT AQAIDAILSW EYVLRNIPWG LLFLLGGGFA LAVASRETGL 420
  421 NIMISKAMQV LIGLPNIVVQ SITFVLANFF SAFNANVVVA NIVLPILCEM SLALELHPLI 480
  481 LTLPACLGIS MVYFLPVSTP PNAIVTQYAH IKTKYFACCG IVPTIIGISV ALVNTNTWGL 540
  541 IIFPESKSFP DWAKEIKNQT KI