YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG4465-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	75	0.92
Transmembrane Helix	76	98	0.81
Non-Cytoplasmic	99	173	0.84
Transmembrane Helix	174	191	0.90
Cytoplasmic	192	198	0.82
Transmembrane Helix	199	217	0.91
Non-Cytoplasmic	218	224	0.68
Transmembrane Helix	225	246	0.91
Cytoplasmic	247	256	0.81
Transmembrane Helix	257	276	0.95
Non-Cytoplasmic	277	283	0.79
Transmembrane Helix	284	303	0.95
Cytoplasmic	304	375	0.98
Transmembrane Helix	376	398	0.91
Non-Cytoplasmic	399	407	0.84
Transmembrane Helix	408	431	0.87
Cytoplasmic	432	439	0.82
Transmembrane Helix	440	459	0.97
Non-Cytoplasmic	460	470	0.82
Transmembrane Helix	471	494	0.81
Cytoplasmic	495	504	0.78
Transmembrane Helix	505	527	0.77
Non-Cytoplasmic	528	532	0.77
Transmembrane Helix	533	554	0.91
Cytoplasmic	555	577	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKDNLYRGW MPNIRRNSPA PLDLGHMAHS FTCTDPKANE VSPQTPHPKA NNLADDNDDD  60
   61 VITHIMGNFG PWQLRSLLIL FLCKIPAAWF MACILFTAPD LYPEEEYKCD TTAFGPDVNS 120
  121 TVSLDHCYVM VNYGESAYAM RQCRKFLYTT GFHSLTMEFD LVCLCDFFVA WSQYWHLFGL 180
  181 LIGGVAATKL MRVLSPRQIY RTGIWCLLMC SLLMGLVKDF SLHCGLRCLA AVSCCFMITS 240
  241 GQYIFGDITA GKYRVGTLIL YDCFWALGLI LLPGLASNAP SWQHIYLGVT LSLLVIVFLL 300
  301 PWTPDSPRWQ LQHTKEAQLA IERTVGILLE AARTNGRMHK VSKELPQQLE ELRERMLEPM 360
  361 PAVHWMHLWM GQRRSTFHLV AVHMALATFM VVNTGLLLHV RSFGREHLVS NTLAMGLAEM 420
  421 LGCFLALHLT FNLSERKWQW AGGFAIVVGC IGSICWFLAE EDMPEVYGLT LGLLMASLPQ 480
  481 AAVACAQSMI LACLGELVPM EQRSCLSFSA VTWARVWQLS ASFLTLLRQV SPALSLSAFC 540
  541 LLVILGGLGT CCLVTRDKEQ PPVGAVVNKG QQLIAFT