YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ninaE-PA
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESFAVAAAQ LGPHFAPLSN GSVVDKVTPD MAHLISPYWN QFPAMDPIWA KILTAYMIMI  60
   61 GMISWCGNGV VIYIFATTKS LRTPANLLVI NLAISDFGIM ITNTPMMGIN LYFETWVLGP 120
  121 MMCDIYAGLG SAFGCSSIWS MCMISLDRYQ VIVKGMAGRP MTIPLALGKI AYIWFMSSIW 180
  181 CLAPAFGWSR YVPEGNLTSC GIDYLERDWN PRSYLIFYSI FVYYIPLFLI CYSYWFIIAA 240
  241 VSAHEKAMRE QAKKMNVKSL RSSEDAEKSA EGKLAKVALV TITLWFMAWT PYLVINCMGL 300
  301 FKFEGLTPLN TIWGACFAKS AACYNPIVYG ISHPKYRLAL KEKCPCCVFG KVDDGKSSDA 360
  361 QSQATASEAE SKA

Type	Start	End	Confidence
Non-Cytoplasmic	1	51	0.90
Transmembrane Helix	52	76	0.90
Cytoplasmic	77	86	0.82
Transmembrane Helix	87	107	0.89
Non-Cytoplasmic	108	124	0.84
Transmembrane Helix	125	146	0.91
Cytoplasmic	147	164	0.90
Transmembrane Helix	165	187	0.88
Non-Cytoplasmic	188	219	0.90
Transmembrane Helix	220	239	0.93
Cytoplasmic	240	276	0.92
Transmembrane Helix	277	295	0.83
Non-Cytoplasmic	296	310	0.66
Transmembrane Helix	311	331	0.64
Cytoplasmic	332	373	0.75