YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG6231-PA, FBpp0...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.93
Transmembrane Helix	16	37	0.90
Non-Cytoplasmic	38	119	0.94
Transmembrane Helix	120	141	0.89
Cytoplasmic	142	147	0.85
Transmembrane Helix	148	168	0.81
Non-Cytoplasmic	169	175	0.64
Transmembrane Helix	176	197	0.84
Cytoplasmic	198	206	0.87
Transmembrane Helix	207	228	0.93
Non-Cytoplasmic	229	233	0.83
Transmembrane Helix	234	255	0.94
Cytoplasmic	256	327	0.99
Transmembrane Helix	328	346	0.95
Non-Cytoplasmic	347	353	0.87
Transmembrane Helix	354	377	0.91
Cytoplasmic	378	385	0.91
Transmembrane Helix	386	407	0.92
Non-Cytoplasmic	408	413	0.83
Transmembrane Helix	414	432	0.92
Cytoplasmic	433	451	0.78
Transmembrane Helix	452	471	0.93
Non-Cytoplasmic	472	477	0.76
Transmembrane Helix	478	498	0.93
Cytoplasmic	499	585	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFDQILAKC GDFNRYQFMI LALFGFINII VSMHYFTQTV ISFVPDHWCY HDKLVNMTYK  60
   61 EIGEIYAQFE NPSCTRLDDI NGHNVTVSSK ACEKWIYNYD FGYRSMNTEL NWVCDSAYKA 120
  121 RIGQSLFFIG SVVGTLFYGL LSDKIGRVPA LILSNFCGFA GDFSTIFTKS VATFTLCRFI 180
  181 SGLAADTNFY LMYIIVLEYI RPSMRTLGLN MAVGLFYCLG LVFTPWLAVL VGHWQIYLAC 240
  241 TSLPILLVVL YYFVVQESAQ WLVTRNDIDG AIVRLKRVAK FNGCRVSQAD FDEFRRHCQM 300
  301 THEMLGGDDK KQATLLDMFR TPRMRKNTLI LFFKSMVITL CYDAVSRNVE GMGISPFIMF 360
  361 SLSALAVLPS SVLLVLLQDR IGRKGMASGS LLVGGLFTAA AGIAIAYQQH NHNAILLACL 420
  421 TIAARFGVAI SYESGSQYAT ELIPTCVRGQ GVAAVHVAGF AASFLAPYIL WLGTFFKAAP 480
  481 SIILGVLFFA GSFVCLLLPE TLNRSLPTTI EEGEVFGKGE RMFDFPCLHN KHDDEESESE 540
  541 LEKYKRKHSL IDAKQMQMES CSNGKRKQSL IDADHEEQAL KDANH