YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG16727-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.85
Transmembrane Helix	16	36	0.78
Non-Cytoplasmic	37	120	0.86
Transmembrane Helix	121	141	0.88
Cytoplasmic	142	149	0.67
Transmembrane Helix	150	171	0.81
Non-Cytoplasmic	172	178	0.58
Transmembrane Helix	179	197	0.87
Cytoplasmic	198	206	0.83
Transmembrane Helix	207	229	0.93
Non-Cytoplasmic	230	236	0.84
Transmembrane Helix	237	256	0.93
Cytoplasmic	257	326	0.96
Transmembrane Helix	327	345	0.88
Non-Cytoplasmic	346	356	0.83
Transmembrane Helix	357	377	0.89
Cytoplasmic	378	385	0.87
Transmembrane Helix	386	407	0.94
Non-Cytoplasmic	408	413	0.86
Transmembrane Helix	414	432	0.89
Cytoplasmic	433	451	0.83
Transmembrane Helix	452	472	0.92
Non-Cytoplasmic	473	478	0.79
Transmembrane Helix	479	498	0.93
Cytoplasmic	499	545	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFDRVLEKC GNFGRFQFVI LILYGYTNIL SSLHYFSQTL ITFTPEHWCS HDDLMGLGAA  60
   61 ELRSIYSNVS HPSCTLLSEV INGTGVASEE SCQDWIFERE NGYESLTTEL KWVCDKSHQP 120
  121 AVGQSFFFLG SVVGTISFGF LSDHIGRLPA MLMAALSGAT GDFITSFVHT LPWFAFSRFV 180
  181 SGLSTDTMYY LMYILVFEYL SPKRRTFGLN IILAVFYCFG LMTSPWIAMW IGNWRRYLWL 240
  241 ASLPALGVLI YPLLICESAQ WLLTKKKYDE AVACLKKVAK FNGRQVEDSV FDEFVKHYRE 300
  301 KMNEESKLNK QMDTFLGMFK TPRLRRFTTT LLVKSVIITL SYDVINRNME GLGSSPFKLF 360
  361 SLTSSVYLPA GFTILLLQNK IGRKGMACGA LLVGAIITAV TGFLIAVLDP SENAVLLALM 420
  421 VGLGRFGTTV SYDAEIQYAA EIIPTSVRGQ AVSNIHVVGL ASSSLAFYVI YLAQYYKPLP 480
  481 SIFISVLMFL GALLCLTLPE TLHKKLPETL ADGERFAMNE SCLYFPCLHK RRESLTEHED 540
  541 RKSEP