YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG17752-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.91
Transmembrane Helix	13	36	0.75
Non-Cytoplasmic	37	110	0.89
Transmembrane Helix	111	132	0.90
Cytoplasmic	133	140	0.72
Transmembrane Helix	141	160	0.86
Non-Cytoplasmic	161	169	0.59
Transmembrane Helix	170	188	0.88
Cytoplasmic	189	197	0.82
Transmembrane Helix	198	220	0.93
Non-Cytoplasmic	221	227	0.83
Transmembrane Helix	228	247	0.94
Cytoplasmic	248	315	0.97
Transmembrane Helix	316	335	0.93
Non-Cytoplasmic	336	347	0.80
Transmembrane Helix	348	366	0.96
Cytoplasmic	367	374	0.85
Transmembrane Helix	375	395	0.93
Non-Cytoplasmic	396	401	0.82
Transmembrane Helix	402	421	0.92
Cytoplasmic	422	440	0.88
Transmembrane Helix	441	461	0.94
Non-Cytoplasmic	462	467	0.79
Transmembrane Helix	468	487	0.92
Cytoplasmic	488	538	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLQRVLEKC GNFGPYQILL LGLYGYTNIV SSLHYFSQTL ISFTPSHRCS APVEEFSQNF  60
   61 TELLSCSVIQ YDVDMTSFRD NKCSSWDFDK ESNYESITTE LEWVCDDAYK LAVGQSFFFI 120
  121 GSALGSIFFG YLADRIGRLP ACVLSTLTGA SGDFFTSFVG SLPMFSFTRF ISGLSMDTQY 180
  181 VLMYILVFEY LSPQHRTFGL NIILGVFYSI GLMISPWIAI WLGNWRSYLW AASLPALGML 240
  241 IFPLFLHESV EWLLTKGKFD KAVNNLKSVA KFNGRQVEDS VFDEFIKHYR EKLNSAQKKS 300
  301 SDTFMGMLRT PRLRKFTIIL LIKSMIITIA FDILSRNVEG VGISPFKLFS YSGFVVLPGG 360
  361 LSIILFQNKI GRKGMACASL LVGAFITATT GYLVGTLDPA NYSVLLGFMV CLARFGAVVA 420
  421 YDAEAQYAAE IIPTSVRGRG VANIHVVGNA FAFFSSYIIY LGTFYKPLPS LLISFLLIIG 480
  481 ACLCLTLPET LHKQLPQTLE EGEIFAKGEK WYFFPCFSRK RQSNKSESQL ESANEITK