YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Rh2-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERSHLPETP FDLAHSGPRF QAQSSGNGSV LDNVLPDMAH LVNPYWSRFA PMDPMMSKIL  60
   61 GLFTLAIMII SCCGNGVVVY IFGGTKSLRT PANLLVLNLA FSDFCMMASQ SPVMIINFYY 120
  121 ETWVLGPLWC DIYAGCGSLF GCVSIWSMCM IAFDRYNVIV KGINGTPMTI KTSIMKILFI 180
  181 WMMAVFWTVM PLIGWSAYVP EGNLTACSID YMTRMWNPRS YLITYSLFVY YTPLFLICYS 240
  241 YWFIIAAVAA HEKAMREQAK KMNVKSLRSS EDCDKSAEGK LAKVALTTIS LWFMAWTPYL 300
  301 VICYFGLFKI DGLTPLTTIW GATFAKTSAV YNPIVYGISH PKYRIVLKEK CPMCVFGNTD 360
  361 EPKPDAPASD TETTSEADSK A

Type	Start	End	Confidence
Non-Cytoplasmic	1	58	0.79
Transmembrane Helix	59	83	0.91
Cytoplasmic	84	93	0.75
Transmembrane Helix	94	116	0.77
Non-Cytoplasmic	117	131	0.81
Transmembrane Helix	132	153	0.90
Cytoplasmic	154	176	0.86
Transmembrane Helix	177	195	0.95
Non-Cytoplasmic	196	226	0.87
Transmembrane Helix	227	246	0.91
Cytoplasmic	247	287	0.90
Transmembrane Helix	288	308	0.88
Non-Cytoplasmic	309	315	0.83
Transmembrane Helix	316	338	0.60
Cytoplasmic	339	381	0.71