YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG7708-PB, CG7708-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.92
Transmembrane Helix	5	25	0.93
Cytoplasmic	26	39	0.94
Transmembrane Helix	40	64	0.82
Non-Cytoplasmic	65	77	0.84
Transmembrane Helix	78	99	0.88
Cytoplasmic	100	120	0.94
Transmembrane Helix	121	145	0.86
Non-Cytoplasmic	146	156	0.74
Transmembrane Helix	157	176	0.93
Cytoplasmic	177	182	0.73
Transmembrane Helix	183	202	0.92
Non-Cytoplasmic	203	225	0.93
Transmembrane Helix	226	246	0.94
Cytoplasmic	247	259	0.91
Transmembrane Helix	260	283	0.90
Non-Cytoplasmic	284	321	0.93
Transmembrane Helix	322	345	0.86
Cytoplasmic	346	365	0.90
Transmembrane Helix	366	387	0.93
Non-Cytoplasmic	388	391	0.72
Transmembrane Helix	392	415	0.80
Cytoplasmic	416	424	0.78
Transmembrane Helix	425	446	0.85
Non-Cytoplasmic	447	462	0.83
Transmembrane Helix	463	484	0.90
Cytoplasmic	485	614	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINIAGVVSI VLFYLLILVV GIWAGRKKQS GNDSEEEVML AGRSIGLFVG IFTMTATWVG  60
   61 GGYINGTAEA IYTSGLVWCQ APFGYALSLV FGGIFFANPM RKQGYITMLD PLQDSFGERM 120
  121 GGLLFLPALC GEVFWAAGIL AALGATLSVI IDMDHRTSVI LSSCIAIFYT LFGGLYSVAY 180
  181 TDVIQLFCIF IGLWMCIPFA WSNEHVGSLS DLEVDWIGHV EPKKHWLYID YGLLLVFGGI 240
  241 PWQVYFQRVL SSKTAGRAQL LSYVAAAGCI LMAIPPVLIG AIAKATPWNE TDYKGPYPLT 300
  301 VDETSMILPM VLQYLTPDFV SFFGLGAVSA AVMSSADSSV LSAASMFARN VYKLIFRQKA 360
  361 SEMEIIWVMR VAIIVVGILA TIMALTIPSI YGLWSMCSDL VYVILFPQLL MVVHFKKHCN 420
  421 TYGSLSAYIV ALAIRLSGGE AILGLAPLIK YPGYDEETKE QMFPFRTMAM LLSLVTLISV 480
  481 SWWTKMMFES GKLPPSYDYF RCVVNIPEDV QRVGDPSESG EQLSVMAGPL ARSYGAATMA 540
  541 GKDERNGRIN PALESDDDLP VAEARRINQE TAQAQVKKML DNATGVKPSG GGGGHLQSQS 600
  601 GMAMPTAEQD NTAF