YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Vha100-2-PA, Vha...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDMFRSEEM ALCQMFIQPE AAYTSVSELG ETGCVQFRDL NVNVNAFQRK FVTEVRRCDE  60
   61 LERKIRYIET EIKKDGIVLP DIQDDIPRAP NPREIIDLEA HLEKTESEMI ELAQNEVNMK 120
  121 SNYLELTELR KVLENTQGFF SDQEVLNLDS SNRAGGDNDA AAQHRGRLGF VAGVINRERV 180
  181 FAFERMLWRI SRGNVFLKRS DLDEPLNDPA TGHPIYKTVF VAFFQGEQLK NRIKKVCTGF 240
  241 HASLYPCPSS HNEREEMVRN VRTRLEDLKL VLSQTEDHRS RVLATVSKNL PSWSIMVKKM 300
  301 KAIYHTLNLF NMDVTKKCLI GECWVPTNDL PVVQKALSDG SAAVGSTIPS FLNVIDTNEQ 360
  361 PPTFNRTNKF TRGFQNLIDA YGVASYRECN PALYTCITFP FLFAVMFGDL GHGLILVLFG 420
  421 AWMVLCERKL ARIRNGGEIW NIFFGGRYII LLMGLFAMYT GLVYNDVFSK SMNLFGSRWF 480
  481 NNYNTTTVLT NPNLQLPPNS SAVGVYPFGM DPVWQLADNK IIFLNSFKMK LSIIFGVLHM 540
  541 VFGVCMSVVN FTHFKRYASI FLEFVPQILF LLLLFGYMVF MMFFKWFSYN ARTSFQPETP 600
  601 GCAPSVLIMF INMMLFKNTE PPKGCNEFMF ESQPQLQKAF VLIALCCIPW MLLGKPLYIK 660
  661 FTRKNKAHAN HNGQLTGNIE LAEGETPLPT GFSGNEENAG GAHGHDDEPM SEIYIHQAIH 720
  721 TIEYVLSTIS HTASYLRLWA LSLAHAQLSE VLWQMVLSLG LKMSGVGGAI GLFIIFGAWC 780
  781 LFTLAILVLM EGLSAFLHTL RLHWVEFMSK FYEGMGYAFQ PFSFKAILDG EEEE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle