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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Fsh-PB, Fsh-PA
Protein type: Transmembrane
Type Confidence: 0.81
Topology Confidence: 0.67
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKHPSLSQR MGTTYRPRKG LKCLSFEFQC RLLLHHLLLT SLSGRHFVYA TSAVGGALSA  60
   61 NNCHDIHHGF DVYPNLTAVS LAQSTDTPLT ATMPRSAWKC CCWNASNQAE EVECRCEGDG 120
  121 LNRVPQTLTL PIQRLTIASA GLPRLRHTGL KVYGSTLLDV AFTDCLQLEL IQDGAFANLT 180
  181 LLRTIYITNA PKLTFLSKDV FLGISDTVDI IRIINSGLTR VPDLGHLPPH NILQMIDLDN 240
  241 NQITRIDSKS IKVKTAQLIL TNNEISYVDD SAFFGSKIAK LSLKENKKLQ MMHPNAFDGI 300
  301 IDITELDLSS TSLVGLPSAG LQNIEALYIQ NTHTLKTIPS IYNFRNLQRA YLTHSFHCCA 360
  361 FQFPSRHDPQ RHAQRMLEIE KWRKQCKSDS GTRKERSTLD NPFNMPEDFG SFGGTDDSAT 420
  421 DITPITFASF DYMADDTMNK GTFHEKIILN PGDDSSAELC GNFTFRKPNI ECYPMPNDLN 480
  481 PCEDVMGYQW LRISVWIVVA LAVVGNVAVL TVILSIRPES TPVPRFLMCH LAFADLCLGL 540
  541 YLLLVACIDA HSMGEYFNFA YDWQYGLGCK VAGFLTVFAS HLSVFTLTVI TIERWLAITQ 600
  601 AMYLNHRIKL RPAALIMLGG WIYSMLMSSL PLFGISNYSS TSICLPMENR DVYDTIYLIA 660
  661 ILGSNGVAFS IIAVCYAQIY LSLGRETRQA HQNSPGELSV AKKMALLVFT NFACWSPIAF 720
  721 FGLTALAGYP LINVTKSKIL LVFFYPLNSC ADPYLYAILT SQYRQDLFTL LSKLGLCQQS 780
  781 ALKYKDSLSG QATTRFTIHG SIQRHSSLTC KMQTVMGAET QKMLKNSEDY V

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle