YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Zip3-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQTQVNNFL KCFLQIDEPS NRWTSRHDGE DLDDNDHDHD HDDDNDDDES GVLVAKVTAM  60
   61 VVLFCASAIC GSIPFLLNRC YRWTENQTNA RSAIVVKCLL YFGGGVLLAT TFLHLLPEVQ 120
  121 EVVEELQECG IIGELTFPLA ELLMCCGFFL MYFIEEAMHT YVHHHQKDEA GAAFERGHSI 180
  181 RNSHLLKPTE GNATTPTAPP APLAGTAELG TLSVQNLLQN DLEQQKFATK PQQQANGHGH 240
  241 SHGHGHGHSH LPVIADDADA GDMLASSLRG LFIVSALSLH ELFEGMAIGL ESSASSVWFM 300
  301 FGAVSAHKLV LAFCVGVELI VARTRMLLAV LYVLTFAVVS PLGIGIGILI NHGEETSGPS 360
  361 LVSAILQGFA CGTLIYVVFF EILSKNRSGL RAYLALFVGF LVMFGLQQLT SIGGHGHSHS 420
  421 HSSCSTSEHT HNHQETETET RSASGHTHGH QHDHDHPHHH NHAEELATVH NYEQQLQLLR 480
  481 QVTQKLLEAH PKKDA

Type	Start	End	Confidence
Non-Cytoplasmic	1	56	0.93
Transmembrane Helix	57	77	0.90
Cytoplasmic	78	92	0.90
Transmembrane Helix	93	116	0.87
Non-Cytoplasmic	117	134	0.85
Transmembrane Helix	135	154	0.92
Cytoplasmic	155	269	0.96
Transmembrane Helix	270	290	0.82
Non-Cytoplasmic	291	296	0.83
Transmembrane Helix	297	321	0.83
Cytoplasmic	322	327	0.88
Transmembrane Helix	328	350	0.93
Non-Cytoplasmic	351	359	0.83
Transmembrane Helix	360	380	0.93
Cytoplasmic	381	391	0.77
Transmembrane Helix	392	412	0.89
Non-Cytoplasmic	413	495	0.97