YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG6126-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.87
Transmembrane Helix	21	42	0.84
Non-Cytoplasmic	43	131	0.93
Transmembrane Helix	132	153	0.94
Cytoplasmic	154	161	0.87
Transmembrane Helix	162	181	0.96
Non-Cytoplasmic	182	187	0.79
Transmembrane Helix	188	210	0.89
Cytoplasmic	211	219	0.84
Transmembrane Helix	220	242	0.92
Non-Cytoplasmic	243	248	0.83
Transmembrane Helix	249	267	0.96
Cytoplasmic	268	335	0.99
Transmembrane Helix	336	355	0.92
Non-Cytoplasmic	356	364	0.75
Transmembrane Helix	365	386	0.94
Cytoplasmic	387	393	0.90
Transmembrane Helix	394	413	0.95
Non-Cytoplasmic	414	420	0.77
Transmembrane Helix	421	442	0.88
Cytoplasmic	443	451	0.83
Transmembrane Helix	452	473	0.87
Non-Cytoplasmic	474	480	0.81
Transmembrane Helix	481	500	0.96
Cytoplasmic	501	555	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVDYVLEDL MGKLGEFGKY QFLQFFLQVL SGLTAGMHML SLVTVAAVPE HRCFIEGVDN  60
   61 SSLSVTPWNS SAILAAIPLK PNGELESCLM FDPSSPGTNT TINCERYVYD TTYYKTSRTI 120
  121 DWNFVCDRRW MGAIVQTVFM LGVFTGAVTL GGLADKVGRK TVFCWSALFQ LIIGVGVAFI 180
  181 PEYFSFMVAR YLLGIVGSAG AYICGFVLTM ELVGPTKRTV CGITFQAVFA GGIMLVAGWG 240
  241 ALIPDRQWLQ VIYGLHGCLF LGHWWWLDES PRWLWMQGRA AEAVDIVAKG LRINGSGIPV 300
  301 DKEYYVQKAK QQAAAEEKSS AGLSDLFRTP NLRMKTLNVC LCWFANSLVY YGLSLSAGKL 360
  361 YGNPYLILFI MGLVEFPSYI TIVFVLDRLG RRSITSTLML GGGLCCIVAA YIAQGSTTST 420
  421 AVVMAGKLLI AGSFAVIYNY SAELFPTVVR NSAMGLGSMC ARLSGALTPL ITLLDSFDPK 480
  481 IPAVLFGVVA LISGFWVMFL PETMNQPMPE SIEDGENFGK GDTWFSQCAG RKKRQNSVYP 540
  541 DDPEQMVPLK NIESK