YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FBpp0301218, FBp...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	177	0.59
Transmembrane Helix	178	197	0.64
Cytoplasmic	198	204	0.83
Transmembrane Helix	205	224	0.93
Non-Cytoplasmic	225	230	0.78
Transmembrane Helix	231	253	0.89
Cytoplasmic	254	263	0.80
Transmembrane Helix	264	285	0.90
Non-Cytoplasmic	286	291	0.79
Transmembrane Helix	292	310	0.93
Cytoplasmic	311	370	0.95
Transmembrane Helix	371	390	0.95
Non-Cytoplasmic	391	399	0.82
Transmembrane Helix	400	422	0.90
Cytoplasmic	423	428	0.90
Transmembrane Helix	429	450	0.92
Non-Cytoplasmic	451	458	0.72
Transmembrane Helix	459	480	0.80
Cytoplasmic	481	490	0.73
Transmembrane Helix	491	513	0.88
Non-Cytoplasmic	514	523	0.76
Transmembrane Helix	524	544	0.93
Cytoplasmic	545	569	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHDSAKQSPT TSPTIPPKQQ AATPQSPAAA VSGLDPADDE DETDVIGDLM GHYGKWQLLM  60
   61 TVLLSLFQVP NTFHISSSIY QAANKDFWCQ RPAQLQHMPV ATWRNLSGSV DNCRRWEGID 120
  121 WSQVSNETTL PSDWKTPAEM DKKLVACEKW EYETNDNVGN TWTSQWDLVC EKEHLKNVAE 180
  181 MFFLLGVATG GIISGYLSDK FGRKTMLFIS AVLQTIFGLW LYICSSFELY LTLRALLGLV 240
  241 SVSVTYSGLI LAIEYVDGKW RTIAGMYNLF PLPISYMIIS GLAYLTQDYQ RLQLCIGIPG 300
  301 IFLCFLWFVV PESPRWLLVK GRIDEVRRII EAAAKFNGRQ LPADYQLTPP TQESSTQDVT 360
  361 YLFRSSYLRR ISICFFCIWF TMNLVYYGII LNMSSFGGNV YLNSALAGLV EIPAIAVAMY 420
  421 IITKVGKKWL FCATLICAGV ACCCAAITEG HADLLWLKIT FLMMGKFTIS AGNTIMPVYT 480
  481 AELYPTPIRN VGVGACNVAA GLALILTPYL SLLVSLPLNK IEGHLLMTLL TAWSIFGGFV 540
  541 VLFLPETAVR QKTDNQGGSS ANASAAKQV