YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Hmt-1-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	25	0.88
Transmembrane Helix	26	47	0.88
Cytoplasmic	48	64	0.91
Transmembrane Helix	65	86	0.92
Non-Cytoplasmic	87	94	0.86
Transmembrane Helix	95	119	0.88
Cytoplasmic	120	134	0.86
Transmembrane Helix	135	154	0.93
Non-Cytoplasmic	155	175	0.84
Transmembrane Helix	176	197	0.88
Cytoplasmic	198	244	0.89
Transmembrane Helix	245	264	0.90
Non-Cytoplasmic	265	289	0.85
Transmembrane Helix	290	311	0.90
Cytoplasmic	312	367	0.94
Transmembrane Helix	368	390	0.91
Non-Cytoplasmic	391	396	0.74
Transmembrane Helix	397	417	0.95
Cytoplasmic	418	485	0.97
Transmembrane Helix	486	507	0.91
Non-Cytoplasmic	508	866	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLYCPPNVTL SEVWTQHGIS HCFMDTVGPA VYGGFLLLFG SIQLLMYRKY ATRITDPTQI  60
   61 SKSRLFAMQL FLLLLLPVLA LLRFLMNARI YPDSAVYGYM IFSTCVVCFS YPFSICLILK 120
  121 ERYYQLPSMP TRGHGLVLLL FWTLAFINES LAFINLRHED WWFHLKTNKD QIEMGLFVTR 180
  181 FLCSLLIFVL GLKAPGIMAP YNPHQRLDND TANESQGNVQ TGSAFRNGWR KLRTVFPYLW 240
  241 PKKNIALQIA VIVCIILLLA GRVIKLFLPI YRKKLVDSLT IAPIVFRWDF VLIYVALSFL 300
  301 QGGGTGSMGL FNNLRTFLWI RVQQYTTREI EIELFRHLHQ LSLRWHLQRK TGEVLRVMDR 360
  361 GTDSINNLLN YIVFSIAPTI LDLLVAVAYF VYAFNWWFGL IVFLTMFLYI ASTIAITEWR 420
  421 TKYQRRMNLA DNEQRARSVD SLLNFETVKY YGAEHYEVDC YREAILKYQK EEFLSMLTLN 480
  481 MLNTAQNIIL CLGLLAGSLL CVYLVVHHQT LTVGDFVLFS TYLMELYMPL NWFGTYYRAI 540
  541 QKNFVDMENM FDLLKEEEEI VDAPGCSPLL TAGGGIEFSN VTFGYSPEKI VLRNVSFTVP 600
  601 AGKTVAIVGP SGAGKSTIMR LLFRFYDVQT GAILIDGQNI KLVQQQSLRK AIGVVPQDTV 660
  661 LFNNTIFYNI EYAKLGASDE AVYEAARAAD IHERILGFPE KYETKVGERG LRLSGGEKQR 720
  721 VAIARTLLKA PIIVLLDEAT SALDTHTERN IQAALARVCA NRTTIIVAHR LSTIIHADEI 780
  781 LVLQQGSIAE RGRHEELVLR EDGIYADMWQ QQLKNLDAEQ SGGSDNGDAS AESGSEKRRA 840
  841 GGAGGPSGTG TGGAHFRAGH AHGGAR