YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Surf4-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIPNEYIAK TEDVAEQVIK RGKNVLPTVA RLCLIATFFE DGLRMYIQWN EQREYMDMSW  60
   61 GCGKFLATVF VLVNLLGQLG GCGMVMARFK VDIAVGLLFF IVVLQTVAYS ILWDFQFLLR 120
  121 NFALIGALLL VLAEARIEGR SLFAGVPSMG ENKPKNFMQL AGRILLAFMF ITLIRFELSV 180
  181 WQVIQDIIGS ILMVLVVLGY KTKLSALILV ALLTILNLYH NAWWTIPSYK PLRDFLKYDF 240
  241 FQTLSVIGGL LMIVSLGPGG VSMDEHKKKW

Type	Start	End	Confidence
Cytoplasmic	1	27	0.72
Transmembrane Helix	28	43	0.52
Non-Cytoplasmic	44	64	0.63
Transmembrane Helix	65	85	0.82
Cytoplasmic	86	92	0.64
Transmembrane Helix	93	112	0.92
Non-Cytoplasmic	113	116	0.72
Transmembrane Helix	117	137	0.85
Cytoplasmic	138	156	0.79
Transmembrane Helix	157	176	0.86
Non-Cytoplasmic	177	181	0.64
Transmembrane Helix	182	200	0.78
Cytoplasmic	201	205	0.65
Transmembrane Helix	206	224	0.91
Non-Cytoplasmic	225	239	0.79
Transmembrane Helix	240	262	0.89
Cytoplasmic	263	270	0.82