YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VhaPPA1-1-PA, FB...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAQIRTVVS QTFLWLFLAV ATILTLYFVM TGKGERVSVG WFLASSNPYM WACLGIGLSV  60
   61 SLSVVGAALG IHTTGTSIVG GGVKAPRIKT KNLISVIFCE AVAIYGLITA IVLSGQLEQF 120
  121 SMETALSQAA IQNTNWFSGY LIFGAGLAVG LVNLFCGIAV GIVGSGAALS DAANAALFVK 180
  181 ILIVEIFGSA IGLFGLIVGI YMTSKSKMGD KE

Type	Start	End	Confidence
Cytoplasmic	1	11	0.84
Transmembrane Helix	12	31	0.95
Non-Cytoplasmic	32	49	0.89
Transmembrane Helix	50	73	0.92
Cytoplasmic	74	92	0.85
Transmembrane Helix	93	113	0.95
Non-Cytoplasmic	114	140	0.85
Transmembrane Helix	141	166	0.87
Cytoplasmic	167	176	0.78
Transmembrane Helix	177	200	0.89
Non-Cytoplasmic	201	212	0.83