YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG14857-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.93
Transmembrane Helix	16	37	0.87
Non-Cytoplasmic	38	122	0.91
Transmembrane Helix	123	142	0.91
Cytoplasmic	143	150	0.71
Transmembrane Helix	151	169	0.82
Non-Cytoplasmic	170	174	0.76
Transmembrane Helix	175	198	0.86
Cytoplasmic	199	207	0.83
Transmembrane Helix	208	229	0.92
Non-Cytoplasmic	230	235	0.80
Transmembrane Helix	236	256	0.95
Cytoplasmic	257	326	0.98
Transmembrane Helix	327	346	0.93
Non-Cytoplasmic	347	353	0.84
Transmembrane Helix	354	377	0.88
Cytoplasmic	378	384	0.94
Transmembrane Helix	385	406	0.93
Non-Cytoplasmic	407	413	0.85
Transmembrane Helix	414	436	0.87
Cytoplasmic	437	451	0.81
Transmembrane Helix	452	471	0.93
Non-Cytoplasmic	472	476	0.83
Transmembrane Helix	477	498	0.93
Cytoplasmic	499	560	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFDQILEKC GSAGRYQYLM ILLLGYIAFT TTVHYYSQNI IGFVPQHWCY HEALENRSFE  60
   61 EIAAIYAPFG KEASCTRLDK IEGDRVTVSN ETCQRWIYNY DFGFRSMNAE LNWVCNDAYK 120
  121 ARIGQSLFFL GSLMGTFTFG VLGDRIGRVR AVILANQCGF VGDFLTTYAS NLVQFAIFRC 180
  181 ISGLAATANY YLMFILVLEY LAPKLRNMAI SGTLGICFCL GALVAPWLSV LAGNWRIYLT 240
  241 CSALLQLVVA LFYFVVQESA QWLITRTNVE GAIARLKHIA HFNGMEVKAA DFEAFRRNCI 300
  301 VKRKLSNQPE QTAGIFDLLR TPNLRKVSLL VVFTFMLTSL SFNTISRNVE GMGLSPFVVF 360
  361 SLFAVVVPPS GFIQGLLQSR VGRKATAFLA MLCTGLLSCA LGVALSTEGA QKNVTLLLAF 420
  421 ALPMRLGISM CYTVTSQFAS ELLPTCVRSR GIAAVHLAAA GASFVSPYLI HLGTKLAAAP 480
  481 SLILALLLLT ASGCTLMLPE TNNRQLPITL ADGEAFGKGE SMLSFDCWRR HDDDVSKEAT 540
  541 EEVRLHQLNG QTKSETEAEV