YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Or88a-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPTEIKKPY RMEEFLRPQM FQEVAQMVHF QWRRNPVDNS MVNASMVPFC LSAFLNVLFF  60
   61 GCNGWDIIGH FWLGHPANQN PPVLSITIYF SIRGLMLYLK RKEIVEFVND LDRECPRDLV 120
  121 SQLDMQMDET YRNFWQRYRF IRIYSHLGGP MFCVVPLALF LLTHEGKDTP VAQHEQLLGG 180
  181 WLPCGVRKDP NFYLLVWSFD LMCTTCGVSF FVTFDNLFNV MQGHLVMHLG HLARQFSAID 240
  241 PRQSLTDEKR FFVDLRLLVQ RQQLLNGLCR KYNDIFKVAF LVSNFVGAGS LCFYLFMLSE 300
  301 TSDVLIIAQY ILPTLVLVGF TFEICLRGTQ LEKASEGLES SLRSQEWYLG SRRYRKFYLL 360
  361 WTQYCQRTQQ LGAFGLIQVN MVHFTEIMQL AYRLFTFLKS H

Type	Start	End	Confidence
Cytoplasmic	1	40	0.96
Transmembrane Helix	41	62	0.86
Non-Cytoplasmic	63	78	0.72
Transmembrane Helix	79	97	0.85
Cytoplasmic	98	142	0.95
Transmembrane Helix	143	162	0.96
Non-Cytoplasmic	163	195	0.92
Transmembrane Helix	196	218	0.84
Cytoplasmic	219	277	0.95
Transmembrane Helix	278	298	0.95
Non-Cytoplasmic	299	305	0.87
Transmembrane Helix	306	326	0.92
Cytoplasmic	327	401	0.90