YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7299791, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKQNVRTIS LIVCTFTYLL VGAAVFDALE SETEKRRWEA LQDAEDMIIR KYNISQEDFK  60
   61 VMETVVLKSE SHKAGQQWKF TGAFYYATTV LTTIGYGHST PSTVGGKLFT MCYAIVGIPL 120
  121 GLVMFQSIGE RAVRSSLRCK RTVASEVDLI CVVTTLSSLT IAGGAAAFSK FEGWSYFDSV 180
  181 YYCFITLTTI GFGDMVALQR DNALNRKPEY VMFALIFILF GLAIVAASLN LLVLRFVTMN 240
  241 TEDERRDEAQ AMQALQVAVK LEGDVITSNG SILSGYEGHD GQSLNGSNTS SMCSCHCICL 300
  301 NGNRHKKSSN LEKNNDAENQ YKLRQSPTHI RHLLPEVVPM QDLNYDYDTQ SLHTLADRGT 360
  361 MDSSYMGVDM ADMGDTGSME LRPHTLLKRN VSLLSIRI

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.39
Transmembrane Helix	8	29	0.61
Cytoplasmic	30	79	0.65
Transmembrane Helix	80	98	0.63
Non-Cytoplasmic	99	106	0.78
Transmembrane Helix	107	128	0.91
Cytoplasmic	129	146	0.93
Transmembrane Helix	147	168	0.92
Non-Cytoplasmic	169	178	0.78
Transmembrane Helix	179	198	0.91
Cytoplasmic	199	209	0.90
Transmembrane Helix	210	232	0.90
Non-Cytoplasmic	233	398	0.94