YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG8795-PA, CG8795-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVKMLPTNS SGVLATDLQL FHNEKFLLNL TQVLNISADN LTSLLQGLEP EELLPTVTPM  60
   61 TPLSLLATLS VGYALIFIAG VLGNLITCIV ISRNNFMHTA TNFYLFNLAI SDMILLCSGM 120
  121 PQDLYNLWHP DNYPFSDSIC ILESVLSETA ANATVLTITA FTVERYIAIC HPFRQHTMSK 180
  181 LSRAVKFIFA IWIAALLLAL PQAIQFSVVM QGMGTSCTMK NDFFAHVFAV SGFLFFGGPM 240
  241 TAICVLYVLI GVKLKRSRLL QALPRRCYDV NRGISAQTRV IRMLVAVAVA FFICWAPFHA 300
  301 QRLMAVYGST SGIESQWFND VFSILDYTSG VLYFLSTCIN PLLYNIMSHK FREAFKVTLA 360
  361 RHFGLGGKNQ GRGLPHTYSA LRRNQTGSLR LHTTDSVRTT MTSMATTTTG LNGSANGSGN 420
  421 GTTTGQSVRL NRVSLDSVQM QGQNRSRQDL FDNPRRMLQT QISQLSSVGD AHSLLEEDLQ 480
  481 FPGEPLQRQP TMCSIDELTD DLAISRSRLK LTRITRPPGG VTGGVAGGST TGAAGSGGVS 540
  541 GDESSGKVRK AKVKVLKSSS PFKGLRTKFN WRARRKGSHK PHEKGATVNG GDTEERAAF

Type	Start	End	Confidence
Non-Cytoplasmic	1	68	0.79
Transmembrane Helix	69	91	0.88
Cytoplasmic	92	102	0.72
Transmembrane Helix	103	122	0.85
Non-Cytoplasmic	123	148	0.69
Transmembrane Helix	149	168	0.73
Cytoplasmic	169	183	0.93
Transmembrane Helix	184	206	0.89
Non-Cytoplasmic	207	227	0.89
Transmembrane Helix	228	250	0.93
Cytoplasmic	251	279	0.95
Transmembrane Helix	280	300	0.93
Non-Cytoplasmic	301	323	0.93
Transmembrane Helix	324	346	0.84
Cytoplasmic	347	599	0.84