YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24646392, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.53
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSSQGANIL GLFPSLSPSH LIIQMSAAKV LAENGHNVTV VTVLKPVVNH KNITVIQVPL  60
   61 SKEEAQQMSD TIGAMSKNDN SNMALSLLRM SDQMDFMIRK NAETLMNDRV RDLYLNRGNK 120
  121 FDLVISGYFM NDFQLGFARK VNAPVIVLAT MPPNHLLNPL IGNPLEVSYA GISNPAEGSK 180
  181 AVTFQRRLSS YMQSLGFGVF SHLSERRNRN WYKEVYGNDP KMPEYSEMLK NTSLVFFSSH 240
  241 AASEGPIRPN VPSAIEIGGI QIKDKPDPLP QNIAEFLGNA TDGAILLSLG SNVQGKHLNP 300
  301 DTVAKMFNVL SKLKERVIWK WEDQENTPGK SANILYSKWL PQDDILAHPN IKLFINHAGK 360
  361 GGITESQYHG KPMLSLPVFA DQPRNANAMV KSGFGLTLSL LTLEEKPFQE AILEILSNPQ 420
  421 YAERVKSFST LYRDRPMTAR ESFLYWTEYV IRHHGAAHLQ SPLVHMSFIA ANNIDICFLI 480
  481 FVILVSVLVL IKFLVQFIYR RFISKPKKEK TH

Type	Start	End	Confidence
Signal Peptide	1	21	0.53
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	475	0.96
Transmembrane Helix	476	495	0.94
Cytoplasmic	496	512	0.90