YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG12201-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEQVEQKNQ EQKKPQKFNV FPKIINGGVA GIIGVACVYP LDMVKTRLQN QTIGPNGERM  60
   61 YTSIADCFRK TIASEGYFGM YRGSAVNIVL ITPEKAIKLT ANDFFRYHLA SDDGVIPLSR 120
  121 ATLAGGLAGL FQIVVTTPME LLKIQMQDAG RVAAADRAAG REVKTITALG LTKTLLRERG 180
  181 IFGLYKGVGA TGVRDITFSM VYFPLMAWIN DQGPRKSDGS GEAVFYWSLI AGLLSGMTSA 240
  241 FMVTPFDVVK TRLQADGEKK FKGIMDCVNR TLKEEGISAF FKGGLCRIMV LAPLFGIAQM 300
  301 FYFLGVGEKI LGIERTKSV

Type	Start	End	Confidence
Cytoplasmic	1	20	0.84
Transmembrane Helix	21	41	0.67
Non-Cytoplasmic	42	115	0.67
Transmembrane Helix	116	136	0.61
Cytoplasmic	137	181	0.85
Transmembrane Helix	182	205	0.56
Non-Cytoplasmic	206	222	0.62
Transmembrane Helix	223	246	0.86
Cytoplasmic	247	282	0.63
Transmembrane Helix	283	306	0.80
Non-Cytoplasmic	307	319	0.63