YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FBpp0306270, CG1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSATIATP LPQPQHQQFA LLPKIINGGI AGIIGVTCVF PLDLVKTRLQ NQQIGPNGER  60
   61 MYNSMFDCFR KTYKAEGYFG MYRGSGVNIL LITPEKAIKL TANDYFRHKL TTKDGKLPLT 120
  121 SQMVAGGLAG AFQIIVTTPM ELLKIQMQDA GRVAAAAKLA GKTVEKVSAT QLASQLIKDK 180
  181 GIFGLYKGIG ATGLRDVTFS IIYFPLFATL NDLGPRRNDG SGEAVFWCSF LAGLAAGSTA 240
  241 ALAVNPFDVV KTRLQAIKKA DGEKEFKGIS DCITKTLKHE GPTAFFKGGL CRMIVIAPLF 300
  301 GIAQTVYYLG VAEGLLGYQK K

Type	Start	End	Confidence
Non-Cytoplasmic	1	19	0.65
Transmembrane Helix	20	42	0.73
Cytoplasmic	43	190	0.65
Transmembrane Helix	191	207	0.54
Non-Cytoplasmic	208	223	0.51
Transmembrane Helix	224	247	0.81
Cytoplasmic	248	287	0.55
Transmembrane Helix	288	311	0.73
Non-Cytoplasmic	312	321	0.55