YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HisCl1-PA
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.43
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSPTSKLVE FRCLIALAIY LHALEQSIQH CHCVHGYRNN TESAELVSHY ESSLSLPDIL  60
   61 PIPSKTYDKN RAPKLLGQPT VVYFHVTVLS LDSINEESMT YVTDIFLAQS WRDPRLRLPE 120
  121 NMSEQYRILD VDWLHSIWRP DCFFKNAKKV TFHEMSIPNH YLWLYHDKTL LYMSKLTLVL 180
  181 SCAMKFESYP HDTQICSMMI ESLSHTVEDL VFIWNMTDPL VVNTEIELPQ LDISNNYTTD 240
  241 CTIEYSTGNF TCLAIVFNLR RRLGYHLFHT YIPSALIVVM SWISFWIKPE AIPARVTLGV 300
  301 TSLLTLATQN TQSQQSLPPV SYVKAIDVWM SSCSVFVFLS LMEFAVVNNF MGPVATKAMK 360
  361 GYSDENISDL DDLKSALQHH RESIIEPQYD TFCHGHATAI YIDKFSRFFF PFSFFILNIV 420
  421 YWTTFL

Type	Start	End	Confidence
Signal Peptide	1	23	0.44
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	264	0.64
Transmembrane Helix	265	286	0.90
Cytoplasmic	287	293	0.50
Transmembrane Helix	294	309	0.47
Non-Cytoplasmic	310	327	0.57
Transmembrane Helix	328	350	0.77
Cytoplasmic	351	404	0.74
Transmembrane Helix	405	425	0.85
Non-Cytoplasmic	426	426	0.72