YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24645984, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.72
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	26	0.71
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	359	0.89
Transmembrane Helix	360	380	0.67
Cytoplasmic	381	406	0.73
Transmembrane Helix	407	433	0.74
Non-Cytoplasmic	434	457	0.61
Transmembrane Helix	458	478	0.86
Cytoplasmic	479	499	0.56
Transmembrane Helix	500	521	0.88
Non-Cytoplasmic	522	527	0.58
Transmembrane Helix	528	552	0.80
Cytoplasmic	553	566	0.45
Transmembrane Helix	567	589	0.81
Non-Cytoplasmic	590	603	0.64
Transmembrane Helix	604	625	0.62
Cytoplasmic	626	644	0.92
Transmembrane Helix	645	667	0.88
Non-Cytoplasmic	668	685	0.91
Transmembrane Helix	686	709	0.85
Cytoplasmic	710	718	0.92
Transmembrane Helix	719	739	0.94
Non-Cytoplasmic	740	750	0.78
Transmembrane Helix	751	771	0.89
Cytoplasmic	772	788	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDSTRSFVL FQLLLLFAVV LIYLRSTYPG SLEPQEVEHL KEPPPADRLV VLVRDGLSAQ  60
   61 SFLANRCTNV PLLRELFLHQ GLVGISRPET ITYHSISPYI SLFSGFNEDA ASVARGWLGT 120
  121 PASIDSIFDR CKRSFAWTTT ELISRFPKIE RPRELSFETY GEGVTKSCSE MEDFVCRSVQ 180
  181 RFLGGGSRLL LNTTGVIFFI HMTGVEPSCE SLQRIQENVW NVYKSFEKTF PDQRTAYLFT 240
  241 SNLGDPQTKT LMSALLGVPP PVYSRGMLPK GMLNASLRYE ANAMLINAKQ LLAQARRLRE 300
  301 LHPKRMPAFW LSFQMMDNFV KESLALKKQR RFRALLDYSC NYMPVLIKGM DYFKDYYRHV 360
  361 SITAVSFAGI AWIYCLRCHL TVGKKCRNLI EIQEVISSKR LVYARGFHRL LTGVLVIIMM 420
  421 LERIPLVVQA ILLIPSLYWR TTLKILGERP KMVCRKSLMS TALLALICFG GFFRRYILAV 480
  481 GYLGFASYNN REAFKRRGHQ FYLWLLLLLG LTVVSALPES LGCSQPGALM FSIFLTVLRP 540
  541 LACGVYLNLL TWLSNIPVLL AALEYILIGW HPWIMYLVSW IYLGFLVLWQ RRNLQASEVF 600
  601 FFDLSTLYTL TCTSYESVVI QMLAMELQLA LRMKLKRNES IGPKTAAHYI LVYSWYSLFI 660
  661 IGSFPAFDDF LDILHETCFG YSPLTYGLVM VLKLILPWLL VLCIMAGNYK SLASYEQQIF 720
  721 VRLLLMNSAM SLVLLHGITN VGPWRDILSR FAEFAVVHVF PLVWLLLWRL TQLKVGSKWM 780
  781 SQLPNELL