YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Ugt86De-PA
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPMSMLVLRL IVLVVALLPV LLEGARILGV FPIPSHSHYY HALPYLKKLA SLGHEITSVS  60
   61 PFPLKEPVAN IHDIPVPELF DNIEEIVGNL TNRKGTWNEF EYINQYTLGL VEKVLENDGV 120
  121 RREILQPESL QFDLIIVDLW RLDALYGLAA YFDAPIIGIA SYGTDWKIDE LVGNVSPLAY 180
  181 LQSPSFNWFD LDTYGGRLGH FVDQSMAWIN WHWRHEERHE AVYRKYFPKI ADKRSLSEIT 240
  241 RNFALILVNQ HFTMAPPRPY VPNIIEVGGM HVDQQPKALP QDLEDFIQGA GEHGVIYFSL 300
  301 GTNVRSRNLS KDRRKILIDT FASLPQRILW KFDADELSDV PSNVLISPWF PQQDILAHPN 360
  361 VKLFITHGGL QSTVECIHRG VPMLGLPFFY DQFRNMEHIK AQGIGLVLNY RDMTSDEFKD 420
  421 TIHQLLTEKS FGVKAKRTAD RYRDQPMNPL DTAIWWTHYV LRHKGAPHMR VAGRNLDFIT 480
  481 YHSLDVLGTF LLAVWAILSI VVLCAIKLLR AILKSKKGNI SPKQKIN

Type	Start	End	Confidence
Signal Peptide	1	24	0.95
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	485	0.99
Transmembrane Helix	486	509	0.88
Cytoplasmic	510	527	0.95