YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG6608-PB, CG6608-PA
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVTTGSTSE ATTTTTPVPR RKHSTREQLH QMLAGGLSAA ITRSTCQPLD VLKIRFQLQV  60
   61 EPLGKNAAKE GPGALTSKYT SIGQAVKTIY REEGMLAFWK GHNPAQVLSI MYGICQFWTY 120
  121 EQLSLMAKQT SYLADHQHLS NFLCGAAAGG AAVIISTPLD VIRTRLIAQD TSKGYRNATR 180
  181 AVSAIVRQEG PRGMYRGLSS ALLQITPLMG TNFMAYRLFS DWACAFLEVS DRSQLPTWTL 240
  241 LGLGASSGML SKTIVYPFDL IKKRLQIQGF ESNRQTFGQT LQCHGVWDCL RLTVRQEGVR 300
  301 GLYKGVAPTL LKSSMTTALY FSIYDKLKQV RF

Type	Start	End	Confidence
Cytoplasmic	1	100	0.79
Transmembrane Helix	101	120	0.56
Non-Cytoplasmic	121	138	0.74
Transmembrane Helix	139	159	0.68
Cytoplasmic	160	196	0.78
Transmembrane Helix	197	216	0.74
Non-Cytoplasmic	217	236	0.81
Transmembrane Helix	237	256	0.80
Cytoplasmic	257	332	0.82