YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Sodh-2-PA
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATDNLTAVL HGIEDLRLEQ RPIPEIADDE VLLAMDSVGI CGSDVHYLAH GRIGDFVLTK  60
   61 PMIIGHEAAG VVAKLGKKVT TLKVGDRVAI EPGVPCRYCD HCKQGRYNLC ADMVFCATPP 120
  121 YDGNLTRYYK HAADFCFKLP DHVSMEEGAL LEPLSVGVHA CRRAGVGLGS KVLILGAGPI 180
  181 GLVTLLAAQA MGASEILITD LVQQRLDVAK ELGATHTLLL QRDQSAEETV KVVHQTMSEV 240
  241 PDKSIDCCGA ESSARLAIFA TRSGGVVVVV GMGAPEVKLP LINALAREID IRGVFRYCND 300
  301 YSAALALVAS GKVNVKRLVT HHYDITETAE AFETSRRGTG GAIKVMIHVQ PRDANNKVKF 360
  361

Type	Start	End	Confidence
Cytoplasmic	1	171	0.67
Transmembrane Helix	172	193	0.64
Non-Cytoplasmic	194	360	0.94