YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Takr86C-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEIVDTELL VNCTILAVRR FELNSIVNTT LLGSLNRTEV VSLLSSIIDN RDNLESINEA  60
   61 KDFLTECLFP SPTRPYELPW EQKTIWAIIF GLMMFVAIAG NGIVLWIVTG HRSMRTVTNY 120
  121 FLLNLSIADL LMSSLNCVFN FIFMLNSDWP FGSIYCTINN FVANVTVSTS VFTLVAISFD 180
  181 RYIAIVHPLK RRTSRRKVRI ILVLIWALSC VLSAPCLLYS SIMTKHYYNG KSRTVCFMMW 240
  241 PDGRYPTSMA DYAYNLIILV LTYGIPMIVM LICYSLMGRV LWGSRSIGEN TDRQMESMKS 300
  301 KRKVVRMFIA IVSIFAICWL PYHLFFIYAY HNNQVASTKY VQHMYLGFYW LAMSNAMVNP 360
  361 LIYYWMNKRF RMYFQRIICC CCVGLTRHRF DSPKSRLTNK NSSNRHTRAE TKSQWKRSTM 420
  421 ETQIQQAPVT SSCREQRSAQ QQQPPGSGTN RAAVECIMER PADGSSSPLC LSINNSIGER 480
  481 QRVKIKYISC DEDNNPVELS PKQM

Type	Start	End	Confidence
Non-Cytoplasmic	1	84	0.93
Transmembrane Helix	85	108	0.94
Cytoplasmic	109	119	0.86
Transmembrane Helix	120	143	0.90
Non-Cytoplasmic	144	160	0.81
Transmembrane Helix	161	179	0.91
Cytoplasmic	180	199	0.83
Transmembrane Helix	200	222	0.91
Non-Cytoplasmic	223	255	0.95
Transmembrane Helix	256	278	0.89
Cytoplasmic	279	303	0.91
Transmembrane Helix	304	326	0.92
Non-Cytoplasmic	327	345	0.92
Transmembrane Helix	346	366	0.95
Cytoplasmic	367	504	0.91