YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	eca-PA
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.90
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDQFISLAL ILCVLHSACG LYFHISETER KCFIEEVPDE TTVIVNYKVE LYDPRSNGFM  60
   61 PSSPGIGMHV EVRDSDDKIV LSRVYSSQGR ISFTSHTPGE HVICMFSNST AWFSGAQLRV 120
  121 HLDIQVGEHA IDYAHVAQKE KLTELQLRIR QLLDQVEQIT KEQNYQRYRE ERFRHTSEST 180
  181 NSRVLWWSLA QTVVLVCMGF WQMRHLKSFF EAKKLV

Type	Start	End	Confidence
Signal Peptide	1	20	0.98
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	183	0.99
Transmembrane Helix	184	203	0.87
Cytoplasmic	204	216	0.85