YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Task7-PA
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKRQNVRTL SLVVCTFTYL LIGAAVFDSL ESPTEAKRWE FLQTVKNNFV RKYNVTDEDF  60
   61 RVMEIVIIEN KPHKAGPQWK FAGAFYFSTV VLAMIGYGHS TPVTIPGKAF CMGYAMVGIP 120
  121 LGLVMFQSIG ERLNKFASVI IRRAKRASGA RCTDATEMNL MLATGMLSSI IITTGAAVFS 180
  181 RYEGWSYFDS FYYCFVTLTT IGFGDYVALQ NDQALTNKPG YVALSLVFIL FGLAVVAASI 240
  241 NLLVLRFMTM QAEDAKRDEQ DAQNLAGNAQ PVTFDDESTY NMHGKLLENN YTTENDETAS 300
  301 LCSCTCMGGT RCLNHEQFVD PDFQPTDIIE STLCLKRASV

Type	Start	End	Confidence
Cytoplasmic	1	8	0.80
Transmembrane Helix	9	27	0.86
Non-Cytoplasmic	28	81	0.80
Transmembrane Helix	82	101	0.89
Cytoplasmic	102	109	0.67
Transmembrane Helix	110	130	0.90
Non-Cytoplasmic	131	159	0.78
Transmembrane Helix	160	180	0.91
Cytoplasmic	181	189	0.65
Transmembrane Helix	190	209	0.85
Non-Cytoplasmic	210	221	0.83
Transmembrane Helix	222	245	0.89
Cytoplasmic	246	340	0.89