YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|194200165, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGGTFRNTQ WDPTLLSSQI VSMQFCVYFT LGLLVFVANK LSGDNYSLDH LFEYHEIHIY  60
   61 DMGGRLVICA FVLNAFLASL ALWCIVRRAK LCLDFSCTFH VLHLLICWWY NRSFPANASW 120
  121 WLLNVITGTI MCIGGEFLCL QTEMKEIPVG YAALNQKSDV

Type	Start	End	Confidence
Cytoplasmic	1	19	0.90
Transmembrane Helix	20	38	0.95
Non-Cytoplasmic	39	61	0.89
Transmembrane Helix	62	84	0.91
Cytoplasmic	85	90	0.83
Transmembrane Helix	91	110	0.90
Non-Cytoplasmic	111	119	0.73
Transmembrane Helix	120	140	0.93
Cytoplasmic	141	160	0.94