YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Or85d-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTKKDTQSA KEQEKLKAIP LHSFLKYANV FYLSIGMMAY DHKYSQKWKE VLLHWTFIAQ  60
   61 MVNLNTVLIS ELIYVFLAIG KGSNFLEATM NLSFIGFVIV GDFKIWNISR QRKRLTQVVS 120
  121 RLEELHPQGL AQQEPYNIGH HLSGYSRYSK FYFGMHMVLI WTYNLYWAVY YLVCDFWLGM 180
  181 RQFERMLPYY CWVPWDWSTG YSYYFMYISQ NIGGQACLSG QLAADMLMCA LVTLVVMHFI 240
  241 RLSAHIESHV AGIGSFQHDL EFLQATVAYH QSLIHLCQDI NEIFGVSLLS NFVSSSFIIC 300
  301 FVGFQMTIGS KIDNLVMLVL FLFCAMVQVF MIATHAQRLV DASEQIGQAV YNHDWFRADL 360
  361 RYRKMLILII KRAQQPSRLK ATMFLNISLV TVSDLLQLSY KFFALLRTMY VN

Type	Start	End	Confidence
Cytoplasmic	1	52	0.85
Transmembrane Helix	53	78	0.81
Non-Cytoplasmic	79	84	0.82
Transmembrane Helix	85	106	0.87
Cytoplasmic	107	151	0.92
Transmembrane Helix	152	173	0.82
Non-Cytoplasmic	174	216	0.71
Transmembrane Helix	217	240	0.80
Cytoplasmic	241	282	0.66
Transmembrane Helix	283	308	0.81
Non-Cytoplasmic	309	314	0.56
Transmembrane Helix	315	336	0.90
Cytoplasmic	337	381	0.65
Transmembrane Helix	382	400	0.53
Non-Cytoplasmic	401	412	0.63