YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Or85c-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFMKYAVFF YTSVGIEPYT IDSRSKKASL WSHLLFWANV INLSVIVFGE ILYLGVAYSD  60
   61 GKFIDAVTVL SYIGFVIVGM SKMFFIWWKK TDLSDLVKEL EHIYPNGKAE EEMYRLDRYL 120
  121 RSCSRISITY ALLYSVLIWT FNLFSIMQFL VYEKLLKIRV VGQTLPYLMY FPWNWHENWT 180
  181 YYVLLFCQNF AGHTSASGQI STDLLLCAVA TQVVMHFDYL ARVVEKQVLD RDWSENSRFL 240
  241 AKTVQYHQRI LRLMDVLNDI FGIPLLLNFM VSTFVICFVG FQMTVGVPPD IMIKLFLFLF 300
  301 SSLSQVYLIC HYGQLIADAS SSLSISAYKQ NWQNADIRYR RALVFFIARP QRTTYLKATI 360
  361 FMNITRATMT DLLQVSYKFF ALLRTMYIK

Type	Start	End	Confidence
Cytoplasmic	1	33	0.95
Transmembrane Helix	34	54	0.95
Non-Cytoplasmic	55	63	0.77
Transmembrane Helix	64	86	0.88
Cytoplasmic	87	125	0.94
Transmembrane Helix	126	146	0.85
Non-Cytoplasmic	147	178	0.83
Transmembrane Helix	179	196	0.50
Cytoplasmic	197	259	0.61
Transmembrane Helix	260	283	0.88
Non-Cytoplasmic	284	290	0.61
Transmembrane Helix	291	315	0.79
Cytoplasmic	316	389	0.68