YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Or85b-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKLMKYASF FYTAVGIRPY TNGEESKMNK LIFHIVFWSN VINLSFVGLF ESIYVYSAFM  60
   61 DNKFLEAVTA LSYIGFVTVG MSKMFFIRWK KTAITELINE LKEIYPNGLI REERYNLPMY 120
  121 LGTCSRISLI YSLLYSVLIW TFNLFCVMEY WVYDKWLNIR VVGKQLPYLM YIPWKWQDNW 180
  181 SYYPLLFSQN FAGYTSAAGQ ISTDVLLCAV ATQLVMHFDF LSNSMERHEL SGDWKKDSRF 240
  241 LVDIVRYHER ILRLSDAVND IFGIPLLLNF MVSSFVICFV GFQMTVGVPP DIVVKLFLFL 300
  301 VSSMSQVYLI CHYGQLVADA SYGFSVATYN QKWYKADVRY KRALVIIIAR SQKVTFLKAT 360
  361 IFLDITRSTM TDLLQISYKF FALLRTMYTQ

Type	Start	End	Confidence
Cytoplasmic	1	34	0.94
Transmembrane Helix	35	55	0.91
Non-Cytoplasmic	56	66	0.75
Transmembrane Helix	67	87	0.92
Cytoplasmic	88	126	0.95
Transmembrane Helix	127	148	0.82
Non-Cytoplasmic	149	195	0.87
Transmembrane Helix	196	217	0.77
Cytoplasmic	218	260	0.86
Transmembrane Helix	261	284	0.87
Non-Cytoplasmic	285	291	0.74
Transmembrane Helix	292	314	0.72
Cytoplasmic	315	390	0.80