YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Or85a-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFKYIQEPV LGSLFRSRDS LIYLNRSIDQ MGWRLPPRTK PYWWLYYIWT LVVIVLVFIF  60
   61 IPYGLIMTGI KEFKNFTTTD LFTYVQVPVN TNASIMKGII VLFMRRRFSR AQKMMDAMDI 120
  121 RCTKMEEKVQ VHRAAALCNR VVVIYHCIYF GYLSMALTGA LVIGKTPFCL YNPLVNPDDH 180
  181 FYLATAIESV TMAGIILANL ILDVYPIIYV VVLRIHMELL SERIKTLRTD VEKGDDQHYA 240
  241 ELVECVKDHK LIVEYGNTLR PMISATMFIQ LLSVGLLLGL AAVSMQFYNT VMERVVSGVY 300
  301 TIAILSQTFP FCYVCEQLSS DCESLTNTLF HSKWIGAERR YRTTMLYFIH NVQQSILFTA 360
  361 GGIFPICLNT NIKMAKFAFS VVTIVNEMDL AEKLRRE

Type	Start	End	Confidence
Cytoplasmic	1	42	0.98
Transmembrane Helix	43	66	0.91
Non-Cytoplasmic	67	83	0.90
Transmembrane Helix	84	104	0.90
Cytoplasmic	105	141	0.95
Transmembrane Helix	142	164	0.89
Non-Cytoplasmic	165	189	0.85
Transmembrane Helix	190	213	0.85
Cytoplasmic	214	266	0.94
Transmembrane Helix	267	288	0.87
Non-Cytoplasmic	289	351	0.80
Transmembrane Helix	352	372	0.67
Cytoplasmic	373	397	0.74