YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Coq2-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYALRHLRLQ SARHFRSSYA AAATTKHMLP RQPARVLIGD WSTWDKSRLQ DVCSRSSSTA  60
   61 TEPVKQQTPL QELVSAAKPY AQLMRIDRPI GTYLLFWPCA WSIALSADAG CWPDLTMLGL 120
  121 FGTGALIMRG AGCTINDLWD KDIDAKVERT RLRPLASGQI SQFDAIVFLS AQLSLGLLVL 180
  181 VQLNWQSILL GASSLGLVIT YPLMKRVTYW PQLVLGMAFN WGALLGWCAT QGSVNLAACL 240
  241 PLYLSGVCWT IVYDTIYAHQ DKLDDLQIGV KSTALRFGEN TKVWLSGFTA AMLTGLSAAG 300
  301 WACDQTVPYY AAVGVVGAHL VQQIYSLNID NPSDCAKKFI SNHQVGLILF LGIVLGTLLK 360
  361 SDESKKQRQS SLTTSTASSY VPALPQKPEV LS

Type	Start	End	Confidence
Cytoplasmic	1	89	0.98
Transmembrane Helix	90	111	0.85
Non-Cytoplasmic	112	117	0.72
Transmembrane Helix	118	139	0.73
Cytoplasmic	140	159	0.71
Transmembrane Helix	160	180	0.79
Non-Cytoplasmic	181	184	0.56
Transmembrane Helix	185	203	0.78
Cytoplasmic	204	208	0.67
Transmembrane Helix	209	230	0.76
Non-Cytoplasmic	231	233	0.57
Transmembrane Helix	234	253	0.72
Cytoplasmic	254	282	0.74
Transmembrane Helix	283	302	0.89
Non-Cytoplasmic	303	338	0.51
Transmembrane Helix	339	359	0.86
Cytoplasmic	360	392	0.54