YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Gfr-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.94
Transmembrane Helix	16	35	0.92
Non-Cytoplasmic	36	50	0.74
Transmembrane Helix	51	71	0.91
Cytoplasmic	72	91	0.94
Transmembrane Helix	92	113	0.80
Non-Cytoplasmic	114	117	0.68
Transmembrane Helix	118	139	0.82
Cytoplasmic	140	145	0.72
Transmembrane Helix	146	163	0.95
Non-Cytoplasmic	164	170	0.80
Transmembrane Helix	171	192	0.91
Cytoplasmic	193	206	0.79
Transmembrane Helix	207	226	0.84
Non-Cytoplasmic	227	241	0.66
Transmembrane Helix	242	264	0.91
Cytoplasmic	265	271	0.75
Transmembrane Helix	272	292	0.51
Non-Cytoplasmic	293	298	0.59
Transmembrane Helix	299	318	0.74
Cytoplasmic	319	337	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYKNLEEHNR LVNKYLKIFF VVSLYWCTSI LTVFVNKHLL SSDTVNLGAP LFMSWFQCVV  60
   61 STVICFVASR LSRKYPSVFT FPEGNPLDID TFRKILPLSV LYTLMIGANN LSLSYVTVAF 120
  121 YYIGRSLTTV FSVVLTYVIL RQRTSFKCLL CCGAIVVGFW LGVDQESLTE VFSWRGTIFG 180
  181 VLSSLALAMF SIQTKKSLGY VNQEVWLLSY YNNLYSTLLF LPLIIINGEL ESIITYPHLW 240
  241 ASWFWAAMTL SGLCGFAIGF VTALEIKVTS ALTHNISGTA KACAQTVIAT QYYHDVRSAL 300
  301 WWTSNVVVLV ASAAYTRVKQ LEMMRQHQQR STATQKA