YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG2616-PA, FBpp0...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.28
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKEDSGASS AEANPAESEI SMGRGPRPRS FTGGGGGGGT GGSGGSGGTS GGNNLKPERS  60
   61 AREDDAINRL TDSKSSHRKL LSDPRFQIRP LQQVISACTG AMITACFMTP LDVIKTRMQS 120
  121 QQSPAHKCFF YSNGLMDHLF ASGPNGSELA SLRQRPQFSS SWDALMKISR HEGLAALWSG 180
  181 LGPTLVSALP STIIYFVAYE QFKARYLQIY ESHYNKSQEP RHLEIRDTKK SLPSVVPMMS 240
  241 GVTARICAVT VVSPIELVRT KMQAQRQTYA QMLQFVRSVV ALQGVWGLWR GLRPTILRDV 300
  301 PFSGIYWPIY ESLKQNLGHG SQPSFSLSFL AGVMAGTVAA IVTTPFDVVK THEQIEFGER 360
  361 VIFTDSPARD FGKKSTFSRL TGIYRTHGVR GLFAGCGPRL LKVAPACAIM ISTFEYSKSF 420
  421 FFHYNVRHHN EALLLDNPKD TTVEDDDIE

Type	Start	End	Confidence
Cytoplasmic	1	30	0.70
Transmembrane Helix	31	47	0.28
Non-Cytoplasmic	48	90	0.51
Transmembrane Helix	91	111	0.59
Cytoplasmic	112	173	0.72
Transmembrane Helix	174	198	0.82
Non-Cytoplasmic	199	240	0.74
Transmembrane Helix	241	258	0.56
Cytoplasmic	259	272	0.64
Transmembrane Helix	273	292	0.58
Non-Cytoplasmic	293	324	0.76
Transmembrane Helix	325	346	0.74
Cytoplasmic	347	449	0.65