YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NPFR1-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIISMNQTEP AQLADGEHLS GYASSSNSVR YLDDRHPLDY LDLGTVHALN TTAINTSDLN  60
   61 ETGSRPLDPV LIDRFLSNRA VDSPWYHMLI SMYGVLIVFG ALGNTLVVIA VIRKPIMRTA 120
  121 RNLFILNLAI SDLLLCLVTM PLTLMEILSK YWPYGSCSIL CKTIAMLQAL CIFVSTISIT 180
  181 AIAFDRYQVI VYPTRDSLQF VGAVTILAGI WALALLLASP LFVYKELINT DTPALLQQIG 240
  241 LQDTIPYCIE DWPSRNGRFY YSIFSLCVQY LVPILIVSVA YFGIYNKLKS RITVVAVQAS 300
  301 SAQRKVERGR RMKRTNCLLI SIAIIFGVSW LPLNFFNLYA DMERSPVTQS MLVRYAICHM 360
  361 IGMSSACSNP LLYGWLNDNF RKEFQELLCR CSDTNVALNG HTTGCNVQAA ARRRRKLGAE 420
  421 LSKGELKLLG PGGAQSGTAG GEGGLAATDF MTGHHEGGLR SAITESVALT DHNPVPSEVT 480
  481 KLMPR

Type	Start	End	Confidence
Non-Cytoplasmic	1	88	0.96
Transmembrane Helix	89	112	0.89
Cytoplasmic	113	122	0.92
Transmembrane Helix	123	145	0.92
Non-Cytoplasmic	146	163	0.85
Transmembrane Helix	164	184	0.93
Cytoplasmic	185	197	0.89
Transmembrane Helix	198	219	0.90
Non-Cytoplasmic	220	261	0.92
Transmembrane Helix	262	284	0.92
Cytoplasmic	285	314	0.96
Transmembrane Helix	315	336	0.89
Non-Cytoplasmic	337	354	0.87
Transmembrane Helix	355	376	0.85
Cytoplasmic	377	485	0.91