YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Or83c-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSESPSSR FRELSKYINS LTNLLGVDFL SPKLKFNYRT WTTIFAIANY TGFTVFTILN  60
   61 NGGDWRVGLK ASLMTGGLFH GLGKFLTCLL KHQDMRRLVL YSQSIYDEYE TRGDSYHRTL 120
  121 NSNIDRLLGI MKIIRNGYVF AFCLMELLPL AMLMYDGTRV TAMQYLIPGL PLENNYCYVV 180
  181 TYMIQTVTML VQGVGFYSGD LFVFLGLTQI LTFADMLQVK VKELNDALEQ KAEYRALVRV 240
  241 GASIDGAENR QRLLLDVIRW HQLFTDYCRA INALYYELIA TQVLSMALAM MLSFCINLSS 300
  301 FHMPSAIFFV VSAYSMSIYC ILGTILEFAY DQVYESICNV TWYELSGEQR KLFGFLLRES 360
  361 QYPHNIQILG VMSLSVRTAL QIVKLIYSVS MMMMNRA

Type	Start	End	Confidence
Cytoplasmic	1	39	0.95
Transmembrane Helix	40	59	0.93
Non-Cytoplasmic	60	66	0.83
Transmembrane Helix	67	88	0.87
Cytoplasmic	89	135	0.94
Transmembrane Helix	136	155	0.91
Non-Cytoplasmic	156	192	0.77
Transmembrane Helix	193	213	0.74
Cytoplasmic	214	277	0.75
Transmembrane Helix	278	301	0.70
Non-Cytoplasmic	302	304	0.39
Transmembrane Helix	305	326	0.76
Cytoplasmic	327	397	0.46