YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	jagn-PB, jagn-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATRGGPMVA GTDGNDFEFR QRVAGTYQIS LLNKSRLKYC IFFHALLFFV MLAKLTSDIL  60
   61 DHLDIFVLEI EELEVPPPLW WEYVWAASLL TSFLGLSAAR GNKVREMQKY MVAILLFAIL 120
  121 PLFYCFAYYF SDVWEFATLD KSVELDETDI FVWRGYPYGV FWYAFCFVGF QVHGFTLYFA 180
  181 YNLVKAWKAR TATRKFQ

Type	Start	End	Confidence
Cytoplasmic	1	38	0.97
Transmembrane Helix	39	57	0.94
Non-Cytoplasmic	58	80	0.90
Transmembrane Helix	81	101	0.89
Cytoplasmic	102	109	0.89
Transmembrane Helix	110	130	0.94
Non-Cytoplasmic	131	159	0.97
Transmembrane Helix	160	181	0.95
Cytoplasmic	182	197	0.92