YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28571519, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.11
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDSCTADLR SRRRENPIDR NGNIGGTGKE QATSTRPKLT TEYTQRTNEM TASKEGQESR  60
   61 RTLSDSSAED VRNTGSRTRT NDDEMWRNEL AMNTDSSSVQ PEKREERSHR TGNSNAKLSD 120
  121 AVDVVLRVLL VITFFKLETM TAFKREIHEE ELWLYKNPRR PDIVRGGELL FWVIVAPFLV 180
  181 TIAFYWYTRD RRDFRAASWA WTLALCMNGI PTSVLKITVG RPRPDYFYRC FPDGVMVLNT 240
  241 TSNGVDTSIL DFNCTGLPGD INEGRKSFPS GHSSFAFASF GFIAYYIGAK LHAFDSRGRG 300
  301 HTWRLCIAVI PLFIALLVAV SRTCDYHHHW QDVTIGGLIG LFAGYISYTQ YYPSIFCPDA 360
  361 GIPLVRWPSR EGSQYQRLSG KDDNGSRGPH HLDGGDAVRR PLLADKEESK WY

Type	Start	End	Confidence
Cytoplasmic	1	168	0.56
Transmembrane Helix	169	188	0.95
Non-Cytoplasmic	189	196	0.48
Transmembrane Helix	197	219	0.85
Cytoplasmic	220	229	0.47
Transmembrane Helix	230	244	0.11
Non-Cytoplasmic	245	270	0.56
Transmembrane Helix	271	289	0.87
Cytoplasmic	290	300	0.52
Transmembrane Helix	301	321	0.93
Non-Cytoplasmic	322	328	0.52
Transmembrane Helix	329	352	0.71
Cytoplasmic	353	412	0.66