YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23170372, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDSCTADLR SRRRENPIDR NGNIGGTGKE QATSTRPKLT TEYTQRTNEM TASKEGQESR  60
   61 RTLSDSSAED VRNTGSRTRT NDDEMWRNEL AMNTDSSSVQ PEKREERSHR TGNSNAKLSD 120
  121 AVDVVLRVLL VITFFKLETM TAFKREIHEE ELWLYKNPRR PDIVRGGELL FWVIVAPFLV 180
  181 TIAFYWYTRD RRLCIAVIPL FIALLVAVSR TCDYHHHWQD VTIGGLIGLF AGYISYTQYY 240
  241 PSIFCPDAGI PLVRWPSREG SQYQRLSGKD DNGSRGPHHL DGGDAVRRPL LADKEESKWY 300
  301

Type	Start	End	Confidence
Cytoplasmic	1	168	0.72
Transmembrane Helix	169	187	0.95
Non-Cytoplasmic	188	192	0.61
Transmembrane Helix	193	212	0.88
Cytoplasmic	213	220	0.53
Transmembrane Helix	221	240	0.72
Non-Cytoplasmic	241	300	0.57