YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG12746-PD, CG12...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.14
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTASKEGQES RRTLSDSSAE DVRNTGSRTR TNDDEMWRNE LAMNTDSSSV QPEKREERSH  60
   61 RTGNSNAKLS DAVDVVLRVL LVITFFKLET MTAFKREIHE EELWLYKNPR RPDIVRGGEL 120
  121 LFWVIVAPFL VTIAFYWYTR DRRDFRAASW AWTLALCMNG IPTSVLKITV GRPRPDYFYR 180
  181 CFPDGVMVLN TTSNGVDTSI LDFNCTGLPG DINEGRKSFP SGHSSFAFAS FGFIAYYIGA 240
  241 KLHAFDSRGR GHTWRLCIAV IPLFIALLVA VSRTCDYHHH WQDVTIGGLI GLFAGYISYT 300
  301 QYYPSIFCPD AGIPLVRWPS REGSQYQRLS GKDDNGSRGP HHLDGGDAVR RPLLADKEES 360
  361 KWY

Type	Start	End	Confidence
Cytoplasmic	1	119	0.70
Transmembrane Helix	120	139	0.95
Non-Cytoplasmic	140	147	0.61
Transmembrane Helix	148	170	0.85
Cytoplasmic	171	185	0.56
Transmembrane Helix	186	200	0.14
Non-Cytoplasmic	201	221	0.48
Transmembrane Helix	222	245	0.77
Cytoplasmic	246	251	0.54
Transmembrane Helix	252	272	0.93
Non-Cytoplasmic	273	279	0.46
Transmembrane Helix	280	303	0.70
Cytoplasmic	304	363	0.60