YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Or83b-PB, Or83b-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTSMQPSKY TGLVADLMPN IRAMKYSGLF MHNFTGGSAF MKKVYSSVHL VFLLMQFTFI  60
   61 LVNMALNAEE VNELSGNTIT TLFFTHCITK FIYLAVNQKN FYRTLNIWNQ VNTHPLFAES 120
  121 DARYHSIALA KMRKLFFLVM LTTVASATAW TTITFFGDSV KMVVDHETNS SIPVEIPRLP 180
  181 IKSFYPWNAS HGMFYMISFA FQIYYVLFSM IHSNLCDVMF CSWLIFACEQ LQHLKGIMKP 240
  241 LMELSASLDT YRPNSAALFR SLSANSKSEL IHNEEKDPGT DMDMSGIYSS KADWGAQFRA 300
  301 PSTLQSFGGN GGGGNGLVNG ANPNGLTKKQ EMMVRSAIKY WVERHKHVVR LVAAIGDTYG 360
  361 AALLLHMLTS TIKLTLLAYQ ATKINGVNVY AFTVVGYLGY ALAQVFHFCI FGNRLIEESS 420
  421 SVMEAAYSCH WYDGSEEAKT FVQIVCQQCQ KAMSISGAKF FTVSLDLFAS VLGAVVTYFM 480
  481 VLVQLK

Type	Start	End	Confidence
Cytoplasmic	1	44	0.86
Transmembrane Helix	45	66	0.82
Non-Cytoplasmic	67	73	0.72
Transmembrane Helix	74	94	0.74
Cytoplasmic	95	134	0.95
Transmembrane Helix	135	156	0.92
Non-Cytoplasmic	157	192	0.94
Transmembrane Helix	193	216	0.74
Cytoplasmic	217	347	0.96
Transmembrane Helix	348	369	0.84
Non-Cytoplasmic	370	388	0.80
Transmembrane Helix	389	411	0.85
Cytoplasmic	412	459	0.92
Transmembrane Helix	460	482	0.90
Non-Cytoplasmic	483	486	0.81